After upgrading to ePolicy Orchestrator 5.9, you might need to rebuild indexes if index fragmentation gets too high or the built-in task fails to rebuild those indexes. Rebuilding the indexes is beneficial for better ePO performance. See KB87769 for details: https://kc.mcafee.com/corporate/index?page=content&id=KB87769.
To learn more about ePO 5.9 maintenance best practices, see section 20 of the ePO 5.9 Product Guide, "Maintaining your McAfee ePO server, SQL databases, and bandwidth," beginning on page 321: https://kc.mcafee.com/corporate/index?page=content&id=PD26914.
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